Source code for pycif.plugins.models.template.compile

import os
import subprocess
from shutil import copytree, ignore_patterns, rmtree, copy
from logging import info, debug




def compile(self):
    """
    The ``compile`` function initializes all model information and executables
    prior to any run. Files must be copied in ``$workdir/model``.

    This includes:

        - copying executable if exist

          .. warning::

              It is recommended to copy executable files to make sure than
              later simulations in the present pyCIF computation use the same
              executable. Indeed, it can happen that one runs very long inversions
              in the background and carries on developments, forgetting about
              the background inversions, thus potentially breaking the background
              inversions, or worse, changing the result without error...

        - copy sources and compile if no executable is around, or if explicitly
          required to re-compile.

          .. note::

              As much as possible, the model should be compiled within pyCIF
              to guarantee a traceability of the options used for compiling
              and also dealing with ``platform`` specificities through the
              ``platform`` Plugin (see details
              :doc:`here </documentation/plugins/platforms/index>`)

        - copy extra configuration files, e.g., templates for namelists, etc.

    """