Configuration LMDZ Forward Setup Gcp D13Ch4 Short Reg-Ico#
Download config_lmdz_fwd_setup_gcp_d13ch4_short_reg-ico.yaml
#####################
# pyCIF config file #
#####################
# Define here all parameters for pyCIF following YAML syntax
# For details on YAML syntax, please see:
# http://docs.ansible.com/ansible/latest/YAMLSyntax.html
###############################################################################
# pyCIF parameters
rootdir: &rootdir /tmp/CIF/
outdir: &outdir /tmp/pytest-of-root/pytest-0
verbose: 2
logfile: pycif.log
workdir: !join [*outdir, /fwd_setup_gcp_d13ch4_short_reg-ico]
datei: 2019-01-01 00:00:00
datef: 2019-03-01 00:00:00
###############################################################################
# http://community-inversion.eu/documentation/plugins/modes/forward.html
mode:
plugin:
name: forward
version: std
###############################################################################
# http://community-inversion.eu/documentation/plugins/platforms/docker.html
platform:
plugin:
name: docker
version: cif
###############################################################################
# http://community-inversion.eu/documentation/plugins/models/lmdz.html
model:
plugin:
name: LMDZ
version: reg-ico
auto-recompile: true
force-recompile: false
compile-clean: true
do_chemistry: true
autoflush: false
period_freq: 1MS
flux_freq: 1D
do_physics: true
dump_chemical_lifetime: true
dump_total_mass: true
###############################################################################
# http://community-inversion.eu/documentation/plugins/chemistrys/lmdz.html
chemistry:
plugin:
name: LMDZ
version: SACS
active_species:
13CH4:
molar_mass: 17.035
12CH4:
molar_mass: 16.031
emitted_species:
- 12CH4
- 13CH4
prescribed_species:
- OH
- O1D
- Cl
deposition_species:
- 12CH4
- 13CH4
reactions:
- 13CH4+O1D->CH3O2+OH k=1.11056e-10
- 13CH4+O1D->H2+CH2O k=3.70188e-11
- 13CH4+OH->CH2O k(T)=Aexp(-B/T),A=2.43684e-12,B=1775
- 13CH4+Cl->HCl+CH3 k(T)=Aexp(-B/T),A=6.80729e-12,B=1276.455
- 12CH4+O1D->CH3O2+OH k=1.125e-10
- 12CH4+O1D->H2+CH2O k=3.75e-11
- 12CH4+OH->CH2O k(T)=Aexp(-B/T),A=2.45e-12,B=1775
- 12CH4+Cl->HCl+CH3 k(T)=Aexp(-B/T),A=7.1e-12,B=1270
###############################################################################
# http://community-inversion.eu/documentation/plugins/obsoperators/standard.html
obsoperator:
plugin:
name: standard
version: std
autorestart: true
autoflush: true
###############################################################################
# http://community-inversion.eu/documentation/plugins/obsvects/standard.html
obsvect:
plugin:
name: standard
version: std
dump_obs: true
transform_pipe:
family_pressure:
plugin:
name: families
version: std
type: transform
component: pressure
parameters_in:
- 12CH4
parameter_out: CH4
family_dpressure:
plugin:
name: families
version: std
type: transform
component: dpressure
parameters_in:
- 12CH4
parameter_out: CH4
conc2ratio:
plugin:
name: conc2ratio
version: std
type: transform
unit: volume
component:
- concs
- concs
parameters_in:
names:
- 12CH4
- 13CH4
parameters_out:
names:
- d13C
- CH4
d13C:
isotopologues:
- 13CH4
refs:
- 12CH4
standard: 0.011113
###############################################################################
# http://community-inversion.eu/documentation/plugins/controlvects/standard.html
controlvect:
plugin:
name: standard
version: std
save_out_netcdf: true
transform_pipe:
trans_inicond:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isoinicond
- inicond
unit: mass
parameters_in:
names:
- d13C
- CH4
parameters_out:
names:
- 12CH4
- 13CH4
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C:
standard: 0.011113
trans_BB:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isosignatures
- flux
unit: mass
parameters_in:
names:
- d13C_BB
- CH4_BB
parameters_out:
names:
- 12CH4_BB
- 13CH4_BB
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C_BB:
standard: 0.011113
trans_AGW:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isosignatures
- flux
unit: mass
parameters_in:
names:
- d13C_AGW
- CH4_AGW
parameters_out:
names:
- 12CH4_AGW
- 13CH4_AGW
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C_AGW:
standard: 0.011113
trans_FFG:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isosignatures
- flux
unit: mass
parameters_in:
names:
- d13C_FFG
- CH4_FFG
parameters_out:
names:
- 12CH4_FFG
- 13CH4_FFG
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C_FFG:
standard: 0.011113
trans_NAT:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isosignatures
- flux
unit: mass
parameters_in:
names:
- d13C_NAT
- CH4_NAT
parameters_out:
names:
- 12CH4_NAT
- 13CH4_NAT
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C_NAT:
standard: 0.011113
trans_WET:
plugin:
name: ratio2conc
version: std
type: transform
component:
- isosignatures
- flux
unit: mass
parameters_in:
names:
- d13C_WET
- CH4_WET
parameters_out:
names:
- 12CH4_WET
- 13CH4_WET
spec_mass: 16.0425
iso_mass:
- 16.031
- 17.035
d13C_WET:
standard: 0.011113
family_12CH4:
plugin:
name: families
version: std
type: transform
component: flux
parameters_in:
- 12CH4_BB
- 12CH4_AGW
- 12CH4_FFG
- 12CH4_NAT
- 12CH4_WET
parameter_out: 12CH4
family_13CH4:
plugin:
name: families
version: std
type: transform
component: flux
parameters_in:
- 13CH4_BB
- 13CH4_AGW
- 13CH4_FFG
- 13CH4_NAT
- 13CH4_WET
parameter_out: 13CH4
###############################################################################
# http://community-inversion.eu/documentation/plugins/datavects/standard.html
datavect:
plugin:
name: standard
version: std
components:
meteo:
plugin:
name: LMDZ
version: mass-fluxes
file_freq: 1MS
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/mass-fluxes-acc
flux:
parameters:
CH4_BB:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/flux
file_freq: 1YS
var_freq: 1M
split_freq: 1MS
sort_lat: false
regrid:
method: mass-conservation
hresol: hpixels
vresol: vpixels
err: 1
tresol: 1MS
tsubresol: 10D
file: 'BB/fch4_BB_%Y.nc'
varname: CH4_BB
CH4_AGW:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/flux
file_freq: 1YS
var_freq: 1M
split_freq: 1MS
sort_lat: false
regrid:
method: mass-conservation
hresol: hpixels
vresol: vpixels
err: 1
tresol: 1MS
tsubresol: 10D
file: 'AGW/fch4_AGW_%Y.nc'
varname: CH4_AGW
CH4_FFG:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/flux
file_freq: 1YS
var_freq: 1M
split_freq: 1MS
sort_lat: false
regrid:
method: mass-conservation
hresol: hpixels
vresol: vpixels
err: 1
tresol: 1MS
tsubresol: 10D
file: 'FFG/fch4_FFG_%Y.nc'
varname: CH4_FFG
CH4_NAT:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/flux
file_freq: 1YS
var_freq: 1M
split_freq: 1MS
sort_lat: false
regrid:
method: mass-conservation
hresol: hpixels
vresol: vpixels
err: 1
tresol: 1MS
tsubresol: 10D
file: 'NAT/fch4_NAT_%Y.nc'
varname: CH4_NAT
CH4_WET:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/flux
file_freq: 1YS
var_freq: 1M
split_freq: 1MS
sort_lat: false
regrid:
method: mass-conservation
hresol: hpixels
vresol: vpixels
err: 1
tresol: 1MS
tsubresol: 10D
file: 'WET/fch4_WET_%Y.nc'
varname: CH4_WET
inicond:
parameters:
CH4:
plugin:
name: LMDZ
version: inicond-regular
type: field
file: restart_201901010000.nc
hresol: bands
bands_lat:
- -90.1
- -60
- -30
- 0
- 30
- 60
- 90.1
bands_lon:
- -180.1
- -150
- -120
- -90
- -60
- -30
- 0
- 30
- 60
- 90
- 120
- 150
- 180.1
calcstd: false
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/inicond/CH4
varname: q01
err: 0.1
concs:
parameters:
d13C:
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/concs
file: 'monitor_d13C_NOAA_%Y.nc'
split_freq: 1MS
isosignatures:
parameters:
d13C_BB:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/isosignatures
file_freq: 1YS
split_freq: 1MS
sort_lat: false
hresol: hpixels
vresol: vpixels
err: 0.4
tresol: 1MS
tsubresol: 10D
file: 'BB/d13C.BB_%Y.nc'
varname: BB
d13C_AGW:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/isosignatures
file_freq: 1YS
split_freq: 1MS
sort_lat: false
hresol: hpixels
vresol: vpixels
err: 0.4
tresol: 1MS
tsubresol: 10D
file: 'AGW/d13C.AGW_%Y.nc'
varname: AGW
d13C_FFG:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/isosignatures
file_freq: 1YS
split_freq: 1MS
sort_lat: false
hresol: hpixels
vresol: vpixels
err: 0.4
tresol: 1MS
tsubresol: 10D
file: 'FF/d13C.FF_%Y.nc'
varname: FF
d13C_NAT:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/isosignatures
file_freq: 1YS
split_freq: 1MS
sort_lat: false
hresol: hpixels
vresol: vpixels
err: 0.4
tresol: 1MS
tsubresol: 10D
file: 'NAT/d13C.NAT_%Y.nc'
varname: NAT
d13C_WET:
plugin:
name: gridded_netcdf
version: std
type: flux
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/isosignatures
file_freq: 1YS
split_freq: 1MS
sort_lat: false
hresol: hpixels
vresol: vpixels
err: 0.4
tresol: 1MS
tsubresol: 10D
file: 'WET/d13C.WET_%Y.nc'
varname: WET
deposition:
parameters:
12CH4:
plugin:
name: LMDZ
version: chemfield-regular
type: field
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/deposition
file: 'soil.an%Y.m%m.nc'
file_freq: 1MS
surface_only: true
time_varname: time_counter
split_freq: 1D
varname: Dep_12CH4
13CH4:
plugin:
name: LMDZ
version: chemfield-regular
type: field
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/deposition
file: 'soil.an%Y.m%m.nc'
file_freq: 1MS
surface_only: true
time_varname: time_counter
split_freq: 1D
varname: Dep_13CH4
isoinicond:
parameters:
d13C:
plugin:
name: LMDZ
version: inicond-regular
type: field
file: restart_201901010000.nc
hresol: bands
bands_lat:
- -90.1
- -60
- -30
- 0
- 30
- 60
- 90.1
bands_lon:
- -180.1
- -150
- -120
- -90
- -60
- -30
- 0
- 30
- 60
- 90
- 120
- 150
- 180.1
calcstd: false
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/inicond/d13C
varname: q03
err: 0.03
prescrconcs:
plugin:
name: LMDZ
version: chemfield-regular
type: field
parameters:
OH:
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/prescrconcs
file: 'OH_%Y%m.nc'
file_freq: 1MS
O1D:
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/prescrconcs
file: 'O1D_%Y%m.nc'
file_freq: 1MS
Cl:
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/prescrconcs
file: 'Cl_%Y%m.nc'
file_freq: 1MS
kinetic:
plugin:
name: LMDZ
version: chemfield-regular
type: field
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/kinetic
file: 'kinetic_%Y%m.nc'
file_freq: 1MS
satellites:
parameters:
CH4:
dir: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/GCP_d13CH4/satellites
file: 'monitor_TROPOMI_WFMD_CH4_%Y%m.nc'
nchunks: 10
split_freq: 1MS
formula: 10
pressure: hPa
vinterp_type: linear
product: level
molmass: 16.0425
###############################################################################
# http://community-inversion.eu/documentation/plugins/domains/lmdz.html
domain:
plugin:
name: LMDZ
version: regular
file: /tmp/PYCIF_DATA_TEST/LMDZ/LMDZ_grid_16x10.nc
dir_vcoord: /tmp/PYCIF_DATA_TEST/LMDZ/ACAD/restart
file_vcoord: ELI-16x9x19ST-AP_2020_start.nc
executable: !join [*outdir, /executables0/dispersion.reg-ico.9x16x19.e]