from __future__ import annotations
from pathlib import Path
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def to_output(path: Path) -> Path:
return path.parent.joinpath(f"{path.stem}_out{path.suffix}")
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def remove_file(runsubdir: Path, filename: str, input_only: bool = True) -> None:
path = runsubdir.joinpath(filename)
path.unlink(missing_ok=True)
if not input_only:
to_output(path).unlink(missing_ok=True)
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def remove_spec_files(
runsubdir: Path,
filename: str,
species: list[str],
input_only: bool = True,
) -> None:
path = runsubdir.joinpath(filename)
path.unlink(missing_ok=True)
if not input_only:
to_output(path).unlink(missing_ok=True)
for spec in species:
spec_path = runsubdir.joinpath(f"{path.stem}_{spec}{path.suffix}")
spec_path.unlink(missing_ok=True)
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def flush(self, runsubdir: Path, input_only: bool = True) -> None:
"""Clean a simulation sub directory
Parameters
----------
runsubdir : Path
Path to the simulation sub directory
input_only : bool, optional
Only remove input files and not output files, by default True
"""
runsubdir = Path(runsubdir)
chem = self.chemistry
# Auxiliaries files
remove_file(runsubdir, "run.sh")
remove_file(runsubdir, "dispersion.e")
remove_file(runsubdir, "parameters.nml")
remove_file(runsubdir, "chemical_scheme.nml")
# Domain files
remove_file(runsubdir, "domain.nc")
remove_file(runsubdir, "mesh.nc")
# Mass fluxes files
remove_file(runsubdir, "fluxstoke.nc")
remove_file(runsubdir, "fluxstokev.nc")
remove_file(runsubdir, "phystoke.nc")
# Main input/output files
remove_file(runsubdir, "obs.nc", input_only)
remove_spec_files(runsubdir, "start.nc", chem.active_species)
remove_spec_files(runsubdir, "start_tl.nc", chem.active_species)
remove_spec_files(runsubdir, "trajq.bin", chem.active_species)
remove_spec_files(runsubdir, "flux.nc", chem.emitted_species)
# Chemistry files
if self.do_chemistry:
remove_file(runsubdir, "kinetic.nc")
remove_spec_files(
runsubdir, "prescrconcs.nc", chem.prescribed_species, input_only
)
remove_spec_files(runsubdir, "prodloss.nc", chem.prodloss_species, input_only)
remove_spec_files(runsubdir, "deposition.nc", chem.deposition_species)
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def flushrun(self, rundir, mode, transform_id, full_flush=True):
"""Cleaning the simulation directories to limit space usage"""
# Run subdirectories
for date in self.subsimu_dates:
runsubdir = Path(rundir, date.strftime("%Y-%m-%d_%H-%M"))
flush(self, runsubdir, input_only=False)
# "chain" directory
if mode == "adj":
chain_dir = Path(rundir, "chain")
remove_spec_files(chain_dir, "trajq.bin", self.chemistry.active_species)
if full_flush:
remove_spec_files(chain_dir, "restart.nc", self.chemistry.active_species)
remove_spec_files(chain_dir, "restart.nc", self.chemistry.active_species)
