1rootdir: &rootdir /tmp/CIF/
  2outdir: &outdir /home/chimereicos/pycif_testout/aberchet/d830c13f6da52077499099378767ce4677561e83
  3verbose: 2
  4logfile: pycif.logtest
  5workdir:  !join [*outdir, /adjtltest_short_setup_isotopes_cst-incr_chi-testspace_fullperiod]
  6datei: 2000-01-01 00:00:00
  7datef: 2000-02-01 00:00:00
  8mode:
  9  increments: 0.2
 10  incrmode: cst
 11  plugin:
 12    name: adj-tl_test
 13    version: std
 14  testspace: chi
 15obsoperator:
 16  autorestart: true
 17  plugin:
 18    name: standard
 19    version: std
 20platform:
 21  cores: 10
 22  plugin:
 23    name: LSCE
 24    version: obelix
 25  queue: mediump
 26model:
 27  file_controle: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes/restart/restart_1998.nc
 28  file_vcoord: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes/restart/restart_1998.nc
 29  fileexec:  !join [*rootdir, /model_sources/DISPERSION_gch/dispersion.e]
 30  plugin:
 31    name: LMDZ
 32    version: std
 33chemistry:
 34  file_yaml: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//chem_schemes/d13_scheme_ccrt.yml
 35obsvect:
 36  dump: true
 37  plugin:
 38    name: standard
 39    version: std
 40  transform_pipe:
 41    trans1:
 42      component:
 43      - concs
 44      - concs
 45      parameters_in:
 46        names:
 47        - 12CH4
 48        - 13CH4
 49      parameters_out:
 50        d13C:
 51          isotopologues:
 52          - 13CH4
 53          refs:
 54          - 12CH4
 55          standard: 0.0112372
 56        iso_mass:
 57        - 16.031
 58        - 17.035
 59        names:
 60        - d13C
 61        - CH4
 62        spec_mass: 16.0425
 63      plugin:
 64        name: conc2ratio
 65        type: transform
 66        version: std
 67      unit: volume
 68  wfunc: true
 69controlvect:
 70  plugin:
 71    name: standard
 72    version: std
 73  transform_pipe:
 74    trans1:
 75      component:
 76      - isoinicond
 77      - inicond
 78      parameters_in:
 79        names:
 80        - d13C
 81        - CH4
 82      parameters_out:
 83        d13C:
 84          standard: 0.0112372
 85        iso_mass:
 86        - 16.031
 87        - 17.035
 88        names:
 89        - 12CH4
 90        - 13CH4
 91        spec_mass: 16.0425
 92      plugin:
 93        name: ratio2conc
 94        type: transform
 95        version: std
 96      unit: mass
 97    trans2:
 98      component:
 99      - isosignatures
100      - fluxes
101      parameters_in:
102        names:
103        - d13C_biof
104        - CH4_biof
105      parameters_out:
106        d13C_biof:
107          standard: 0.0112372
108        iso_mass:
109        - 16.031
110        - 17.035
111        names:
112        - 12CH4_biof
113        - 13CH4_biof
114        spec_mass: 16.0425
115      plugin:
116        name: ratio2conc
117        type: transform
118        version: std
119      unit: mass
120    trans3:
121      component:
122      - isosignatures
123      - fluxes
124      parameters_in:
125        names:
126        - d13C_bioge
127        - CH4_bioge
128      parameters_out:
129        d13C_bioge:
130          standard: 0.0112372
131        iso_mass:
132        - 16.031
133        - 17.035
134        names:
135        - 12CH4_bioge
136        - 13CH4_bioge
137        spec_mass: 16.0425
138      plugin:
139        name: ratio2conc
140        type: transform
141        version: std
142      unit: mass
143    trans4:
144      component:
145      - isosignatures
146      - fluxes
147      parameters_in:
148        names:
149        - d13C_fossil
150        - CH4_fossil
151      parameters_out:
152        d13C_fossil:
153          standard: 0.0112372
154        iso_mass:
155        - 16.031
156        - 17.035
157        names:
158        - 12CH4_fossil
159        - 13CH4_fossil
160        spec_mass: 16.0425
161      plugin:
162        name: ratio2conc
163        type: transform
164        version: std
165      unit: mass
166    trans5:
167      component:
168      - isosignatures
169      - fluxes
170      parameters_in:
171        names:
172        - d13C_others
173        - CH4_others
174      parameters_out:
175        d13C_others:
176          standard: 0.0112372
177        iso_mass:
178        - 16.031
179        - 17.035
180        names:
181        - 12CH4_others
182        - 13CH4_others
183        spec_mass: 16.0425
184      plugin:
185        name: ratio2conc
186        type: transform
187        version: std
188      unit: mass
189    trans6:
190      component:
191      - isosignatures
192      - fluxes
193      parameters_in:
194        names:
195        - d13C_wet
196        - CH4_wet
197      parameters_out:
198        d13C_wet:
199          standard: 0.0112372
200        iso_mass:
201        - 16.031
202        - 17.035
203        names:
204        - 12CH4_wet
205        - 13CH4_wet
206        spec_mass: 16.0425
207      plugin:
208        name: ratio2conc
209        type: transform
210        version: std
211      unit: mass
212    trans7:
213      component: fluxes
214      parameter_out: 12CH4
215      parameters_in:
216      - 12CH4_biof
217      - 12CH4_bioge
218      - 12CH4_fossil
219      - 12CH4_others
220      - 12CH4_wet
221      plugin:
222        name: families
223        type: transform
224        version: std
225    trans8:
226      component: fluxes
227      parameter_out: 13CH4
228      parameters_in:
229      - 13CH4_biof
230      - 13CH4_bioge
231      - 13CH4_fossil
232      - 13CH4_others
233      - 13CH4_wet
234      plugin:
235        name: families
236        type: transform
237        version: std
238datavect:
239  components:
240    concs:
241      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//monitor/
242      file: monitor_filtered_rsd_new.nc
243      file_statlev: ${PYCIF_DATATEST}/LMDZ//simple/stations_levels_LMDZ39lev.txt
244      parameters:
245        CH4: {}
246        d13C: {}
247        dD: {}
248    fluxes:
249      file_freq: 1MS
250      parameters:
251        CH4_biof:
252          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
253          err: 1
254          file: fch4.biofuels_biomass_%Y_LMDz9026vector_totCH4.nc
255          hresol: hpixels
256          plugin:
257            name: LMDZ
258            type: fluxes
259            version: sflx
260          tresol: 1MS
261          tsubresol: 10D
262          varname: flx_ch4
263          vresol: vpixels
264        CH4_bioge:
265          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
266          err: 1
267          file: fch4.biogenic_%Y_LMDz9026vector_totCH4.nc
268          hresol: hpixels
269          plugin:
270            name: LMDZ
271            type: fluxes
272            version: sflx
273          tresol: 1MS
274          tsubresol: 10D
275          varname: flx_ch4
276          vresol: vpixels
277        CH4_fossil:
278          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
279          err: 1
280          file: fch4.fossil_%Y_LMDz9026vector_totCH4.nc
281          hresol: hpixels
282          plugin:
283            name: LMDZ
284            type: fluxes
285            version: sflx
286          tresol: 1MS
287          tsubresol: 10D
288          varname: flx_ch4
289          vresol: vpixels
290        CH4_others:
291          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
292          err: 1
293          file: fch4.others_%Y_LMDz9026vector_totCH4.nc
294          hresol: hpixels
295          plugin:
296            name: LMDZ
297            type: fluxes
298            version: sflx
299          tresol: 1MS
300          tsubresol: 10D
301          varname: flx_ch4
302          vresol: vpixels
303        CH4_wet:
304          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
305          err: 1
306          file: fch4.wetlands_%Y_LMDz9026vector_totCH4.nc
307          hresol: hpixels
308          plugin:
309            name: LMDZ
310            type: fluxes
311            version: sflx
312          tresol: 1MS
313          tsubresol: 10D
314          varname: flx_ch4
315          vresol: vpixels
316    inicond:
317      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//restart/
318      file: restart_1998.nc
319      parameters:
320        CH4:
321          bands_lat:
322          - -90.1
323          - -60
324          - -30
325          - 0
326          - 30
327          - 60
328          - 90.1
329          bands_lon:
330          - -180.1
331          - -150
332          - -120
333          - -90
334          - -60
335          - -30
336          - 0
337          - 30
338          - 60
339          - 90
340          - 120
341          - 150
342          - 180.1
343          calcstd: false
344          err: 0.1
345          hresol: bands
346          plugin:
347            name: LMDZ
348            type: fields
349            version: ic
350          restart_id: 1
351    isoinicond:
352      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//restart/
353      file: restart_1998.nc
354      parameters:
355        d13C:
356          bands_lat:
357          - -90.1
358          - -60
359          - -30
360          - 0
361          - 30
362          - 60
363          - 90.1
364          bands_lon:
365          - -180.1
366          - -150
367          - -120
368          - -90
369          - -60
370          - -30
371          - 0
372          - 30
373          - 60
374          - 90
375          - 120
376          - 150
377          - 180.1
378          calcstd: false
379          err: 0.03
380          hresol: bands
381          plugin:
382            name: LMDZ
383            type: fields
384            version: ic
385          restart_id: 3
386    isosignatures:
387      file_freq: 1MS
388      parameters:
389        d13C_biof:
390          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
391          err: 0.4
392          file: biofuels_biomass_%Y_LMDz9026vector.nc
393          hresol: regions
394          plugin:
395            name: LMDZ
396            type: fluxes
397            version: sflx
398          regions_infos:
399            dir: ${PYCIF_DATATEST}/LMDZ/
400            file: 10_regions.nc
401          tresol: 1MS
402          tsubresol: 10D
403          varname: sign_d13c
404        d13C_bioge:
405          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
406          err: 0.4
407          file: biogenic_%Y_LMDz9026vector.nc
408          hresol: regions
409          plugin:
410            name: LMDZ
411            type: fluxes
412            version: sflx
413          regions_infos:
414            dir: ${PYCIF_DATATEST}/LMDZ/
415            file: 10_regions.nc
416          tresol: 1MS
417          tsubresol: 10D
418          varname: sign_d13c
419        d13C_fossil:
420          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
421          err: 0.4
422          file: fossil_%Y_LMDz9026vector.nc
423          hresol: regions
424          plugin:
425            name: LMDZ
426            type: fluxes
427            version: sflx
428          regions_infos:
429            dir: ${PYCIF_DATATEST}/LMDZ/
430            file: 10_regions.nc
431          tresol: 1MS
432          tsubresol: 10D
433          varname: sign_d13c
434        d13C_others:
435          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
436          err: 0.4
437          file: others_%Y_LMDz9026vector.nc
438          hresol: regions
439          plugin:
440            name: LMDZ
441            type: fluxes
442            version: sflx
443          regions_infos:
444            dir: ${PYCIF_DATATEST}/LMDZ/
445            file: 10_regions.nc
446          tresol: 1MS
447          tsubresol: 10D
448          varname: sign_d13c
449        d13C_wet:
450          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
451          err: 0.4
452          file: wetlands_%Y_LMDz9026vector.nc
453          hresol: regions
454          plugin:
455            name: LMDZ
456            type: fluxes
457            version: sflx
458          regions_infos:
459            dir: ${PYCIF_DATATEST}/LMDZ/
460            file: 10_regions.nc
461          tresol: 1MS
462          tsubresol: 10D
463          varname: sign_d13c
464    kinetic:
465      dir: ${PYCIF_DATATEST}/LMDZ//simple/kinetic/
466      file: TransCom.vmr.new.m%m.nc
467      file_freq: 1MS
468      plugin:
469        name: LMDZ
470        type: fields
471        version: photochem
472    meteo:
473      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//meteo/
474      file_freq: 1MS
475      plugin:
476        name: LMDZ
477        version: mass-fluxes
478    prescrconcs:
479      file_freq: 1MS
480      parameters:
481        Cl:
482          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
483          file: CM5A2CHT_DM_%Y_m%m.nc
484        O1D:
485          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
486          file: CM5A2CHT_DM_%Y_m%m.nc
487        OH:
488          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
489          file: CM5A2CHT_DM_%Y_m%m.nc
490      plugin:
491        name: LMDZ
492        type: fields
493        version: prescrconcs
494  plugin:
495    name: standard
496    version: std
497domain:
498  filegrid: ${PYCIF_DATATEST}/LMDZ//grid_LMDZ96_96.txt
499  nlat: 96
500  nlev: 39
501  nlon: 97
502  plugin:
503    name: LMDZ
504    version: std
505  type: deg
506  xmax: 180
507  xmin: -180
508  ymax: 90
509  ymin: -90