Index

C

calc_areas() (pycif.utils.classes.domains.Domain method) check_df() (pycif.utils.classes.obsparsers.ObsParser static method) Chemistry (class in pycif.utils.classes.chemistries) childclass_factory() (pycif.utils.classes.baseclass.Plugin class method) config_info() (pycif.utils.classes.setup.Setup class method) control2native() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method)

ControlVect (class in pycif.utils.classes.controlvects) create_chemicalscheme() (pycif.utils.classes.chemistries.Chemistry method) create_domain() (in module pycif.plugins.domains.chimere) (pycif.utils.classes.domains.Domain method) crop() (pycif.utils.classes.controlvects.ControlVect method)

D

DataStream (class in pycif.utils.classes.datastreams) DataVect (class in pycif.utils.classes.datavects) Domain (class in pycif.utils.classes.domains), [1] dump() (in module pycif.plugins.controlvects.standard.dump) (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method) (pycif.utils.classes.obsvects.ObsVect method)

dump_incorrect() (pycif.utils.classes.baseclass.Plugin class method)

E

execute() (pycif.utils.classes.modes.Mode method)

F

flushrun() (pycif.utils.classes.models.Model method)

from_dict() (pycif.utils.classes.baseclass.Plugin class method) from_yaml() (pycif.utils.classes.baseclass.Plugin class method)

G

get_loaded() (pycif.utils.classes.baseclass.Plugin class method) get_parser() (pycif.utils.classes.obsparsers.ObsParser class method) get_registered() (pycif.utils.classes.baseclass.Plugin class method)

get_sides() (pycif.utils.classes.domains.Domain method), [1] get_subclass() (pycif.utils.classes.baseclass.Plugin class method) get_transform() (pycif.utils.classes.transforms.Transform class method)

I

ini_data() (pycif.utils.classes.domains.Domain method) (pycif.utils.classes.measurements.Measurement method) ini_mapper() (in module pycif.plugins.transforms.basic.families) (pycif.utils.classes.models.Model method) (pycif.utils.classes.transforms.Transform method) ini_periods() (pycif.utils.classes.models.Model method) init_invprod() (pycif.utils.classes.obsvects.ObsVect method) init_y0() (pycif.utils.classes.obsvects.ObsVect method) initiate() (pycif.utils.classes.baseclass.Plugin method) initiate_template() (pycif.utils.classes.baseclass.Plugin method) (pycif.utils.classes.chemistries.Chemistry method) (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datastreams.DataStream method) (pycif.utils.classes.datavects.DataVect method) (pycif.utils.classes.domains.Domain method) (pycif.utils.classes.measurements.Measurement method) (pycif.utils.classes.minimizers.Minimizer method) (pycif.utils.classes.models.Model method) (pycif.utils.classes.modes.Mode method) (pycif.utils.classes.obsoperators.ObsOperator method) (pycif.utils.classes.obsparsers.ObsParser method) (pycif.utils.classes.obsvects.ObsVect method) (pycif.utils.classes.platforms.Platform method) (pycif.utils.classes.simulators.Simulator method) (pycif.utils.classes.transforms.Transform method)

is_allowed() (pycif.utils.classes.baseclass.Plugin class method) is_allowed_as_subtype() (pycif.utils.classes.baseclass.Plugin class method) is_loaded() (pycif.utils.classes.baseclass.Plugin class method) is_registered() (pycif.utils.classes.baseclass.Plugin class method)

L

load() (in module pycif.plugins.controlvects.standard.dump) (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method)

load_registered() (pycif.utils.classes.baseclass.Plugin class method) load_setup() (pycif.utils.classes.setup.Setup class method)

M

make_auxiliary() (pycif.utils.classes.models.Model method) make_input() (pycif.utils.classes.models.Model method) mapper2batch() (pycif.utils.classes.transforms.Transform method) Measurement (class in pycif.utils.classes.measurements) minimize() (pycif.utils.classes.minimizers.Minimizer method) Minimizer (class in pycif.utils.classes.minimizers) Mode (class in pycif.utils.classes.modes) Model (class in pycif.utils.classes.models) module pycif.plugins.chemistries.chimere pycif.plugins.chemistries.TM5 pycif.plugins.controlvects.standard pycif.plugins.datastreams.fields.bc_plugin_template pycif.plugins.datastreams.fields.chimere_icbc pycif.plugins.datastreams.fields.grib2_ecmwf pycif.plugins.datastreams.fields.gridded_NetCDF_inicond pycif.plugins.datastreams.fields.lmdz_ic pycif.plugins.datastreams.fields.lmdz_outfields_nc pycif.plugins.datastreams.fields.lmdz_photochem pycif.plugins.datastreams.fields.lmdz_prescrconcs pycif.plugins.datastreams.fields.lmdz_prodloss3d pycif.plugins.datastreams.fields.netcdf_cams pycif.plugins.datastreams.fields.noaa_glob_avg pycif.plugins.datastreams.fields.oldlmdz_ic pycif.plugins.datastreams.fields.oldlmdz_photochem pycif.plugins.datastreams.fields.oldlmdz_prescrconcs pycif.plugins.datastreams.fields.tm5_background pycif.plugins.datastreams.fields.tm5_ic pycif.plugins.datastreams.fields.wrfchem_icbc pycif.plugins.datastreams.fluxes.becker_ocean pycif.plugins.datastreams.fluxes.CarbonMonitor pycif.plugins.datastreams.fluxes.chimere pycif.plugins.datastreams.fluxes.CMEMS pycif.plugins.datastreams.fluxes.dummy_nc pycif.plugins.datastreams.fluxes.dummy_txt pycif.plugins.datastreams.fluxes.edgar_v5 pycif.plugins.datastreams.fluxes.flexpart pycif.plugins.datastreams.fluxes.flux_plugin_template pycif.plugins.datastreams.fluxes.GCP_1x1 pycif.plugins.datastreams.fluxes.GCP_1x1_N2O pycif.plugins.datastreams.fluxes.GFEDv4 pycif.plugins.datastreams.fluxes.gridded_NetCDF pycif.plugins.datastreams.fluxes.GridFED pycif.plugins.datastreams.fluxes.ins pycif.plugins.datastreams.fluxes.lmdz_bin pycif.plugins.datastreams.fluxes.lmdz_sflx pycif.plugins.datastreams.fluxes.orchidee pycif.plugins.datastreams.fluxes.point_sources pycif.plugins.datastreams.fluxes.tm5 pycif.plugins.datastreams.fluxes.TNO_nc pycif.plugins.datastreams.fluxes.VPRM1km_nc pycif.plugins.datastreams.fluxes.VPRM_nc pycif.plugins.datastreams.fluxes.wrfchem pycif.plugins.datastreams.meteos.chimere_meteo pycif.plugins.datastreams.meteos.dummy_csv pycif.plugins.datastreams.meteos.lmdz_massflx pycif.plugins.datastreams.meteos.tm5_meteo pycif.plugins.datavects.standard pycif.plugins.domains.chimere pycif.plugins.domains.dummy pycif.plugins.domains.flexpart pycif.plugins.domains.gridded_NetCDF pycif.plugins.domains.iconart pycif.plugins.domains.lmdz pycif.plugins.domains.wrfchem pycif.plugins.measurements.random_perparam pycif.plugins.measurements.standard pycif.plugins.minimizers.congrad pycif.plugins.minimizers.m1qn3 pycif.plugins.models.chimere pycif.plugins.models.dummy pycif.plugins.models.flexpart pycif.plugins.models.iconart pycif.plugins.models.lmdz pycif.plugins.models.template pycif.plugins.models.TM5 pycif.plugins.models.wrfchem pycif.plugins.modes.adjtl_test pycif.plugins.modes.analytic pycif.plugins.modes.ensrf pycif.plugins.modes.footprint pycif.plugins.modes.forward pycif.plugins.modes.postproc pycif.plugins.modes.variational pycif.plugins.obsoperators.fp pycif.plugins.obsoperators.standard pycif.plugins.obsparsers.icos pycif.plugins.obsparsers.obspack pycif.plugins.obsparsers.template pycif.plugins.obsparsers.tropomi_official pycif.plugins.obsparsers.tropomi_sron pycif.plugins.obsparsers.tropomi_wfmd pycif.plugins.obsparsers.verify pycif.plugins.obsparsers.wdcgg pycif.plugins.obsvects.standard pycif.plugins.platforms.ccrt_amd pycif.plugins.platforms.docker_cif pycif.plugins.platforms.empa_daint pycif.plugins.platforms.fmi_puhti pycif.plugins.platforms.lsce_obelix pycif.plugins.platforms.tgcc_ccrt pycif.plugins.simulators.dummy pycif.plugins.simulators.gausscost pycif.plugins.simulators.gausscost_flexpart pycif.plugins.transforms.basic.background pycif.plugins.transforms.basic.clipcrop pycif.plugins.transforms.basic.exp pycif.plugins.transforms.basic.families pycif.plugins.transforms.basic.product pycif.plugins.transforms.basic.regrid pycif.plugins.transforms.basic.time_interpolation pycif.plugins.transforms.basic.unit_conversion pycif.plugins.transforms.basic.vertical_interpolation pycif.plugins.transforms.complex.conc2ratio pycif.plugins.transforms.complex.diagmet pycif.plugins.transforms.complex.isotopes pycif.plugins.transforms.complex.moist2dry pycif.plugins.transforms.complex.ratio2conc pycif.plugins.transforms.complex.satellites pycif.plugins.transforms.system.dump2format pycif.plugins.transforms.system.dump2inputs pycif.plugins.transforms.system.fromcontrol pycif.plugins.transforms.system.loadfromoutputs pycif.plugins.transforms.system.run_model pycif.plugins.transforms.system.sample2sparse pycif.plugins.transforms.system.sparse2sample pycif.plugins.transforms.system.toobsvect

N

native2control() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method)

native2inputs() (pycif.utils.classes.models.Model method) native2inputs_adj() (pycif.utils.classes.models.Model method)

O

obsoper() (pycif.utils.classes.obsoperators.ObsOperator method) ObsOperator (class in pycif.utils.classes.obsoperators) ObsParser (class in pycif.utils.classes.obsparsers), [1], [2] ObsVect (class in pycif.utils.classes.obsvects)

outputs2native() (pycif.utils.classes.models.Model method) outputs2native_adj() (pycif.utils.classes.models.Model method) outputs2state() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method)

P

parse_file() (pycif.utils.classes.obsparsers.ObsParser method) parse_multiple_files() (pycif.utils.classes.obsparsers.ObsParser method), [1] parse_tracers() (pycif.utils.classes.measurements.Measurement method) perturb_model() (pycif.utils.classes.models.Model method) perturb_transform() (pycif.utils.classes.transforms.Transform method) Platform (class in pycif.utils.classes.platforms) Plugin (class in pycif.utils.classes.baseclass) plugin_key() (pycif.utils.classes.baseclass.Plugin static method) print_default() (pycif.utils.classes.baseclass.Plugin class method) print_registered() (pycif.utils.classes.baseclass.Plugin class method) pycif.plugins.chemistries.chimere module pycif.plugins.chemistries.TM5 module pycif.plugins.controlvects.standard module pycif.plugins.datastreams.fields.bc_plugin_template module pycif.plugins.datastreams.fields.chimere_icbc module pycif.plugins.datastreams.fields.grib2_ecmwf module pycif.plugins.datastreams.fields.gridded_NetCDF_inicond module pycif.plugins.datastreams.fields.lmdz_ic module pycif.plugins.datastreams.fields.lmdz_outfields_nc module pycif.plugins.datastreams.fields.lmdz_photochem module pycif.plugins.datastreams.fields.lmdz_prescrconcs module pycif.plugins.datastreams.fields.lmdz_prodloss3d module pycif.plugins.datastreams.fields.netcdf_cams module pycif.plugins.datastreams.fields.noaa_glob_avg module pycif.plugins.datastreams.fields.oldlmdz_ic module pycif.plugins.datastreams.fields.oldlmdz_photochem module pycif.plugins.datastreams.fields.oldlmdz_prescrconcs module pycif.plugins.datastreams.fields.tm5_background module pycif.plugins.datastreams.fields.tm5_ic module pycif.plugins.datastreams.fields.wrfchem_icbc module pycif.plugins.datastreams.fluxes.becker_ocean module pycif.plugins.datastreams.fluxes.CarbonMonitor module pycif.plugins.datastreams.fluxes.chimere module pycif.plugins.datastreams.fluxes.CMEMS module pycif.plugins.datastreams.fluxes.dummy_nc module pycif.plugins.datastreams.fluxes.dummy_txt module pycif.plugins.datastreams.fluxes.edgar_v5 module pycif.plugins.datastreams.fluxes.flexpart module pycif.plugins.datastreams.fluxes.flux_plugin_template module pycif.plugins.datastreams.fluxes.GCP_1x1 module pycif.plugins.datastreams.fluxes.GCP_1x1_N2O module pycif.plugins.datastreams.fluxes.GFEDv4 module pycif.plugins.datastreams.fluxes.gridded_NetCDF module pycif.plugins.datastreams.fluxes.GridFED module pycif.plugins.datastreams.fluxes.ins module pycif.plugins.datastreams.fluxes.lmdz_bin module pycif.plugins.datastreams.fluxes.lmdz_sflx module pycif.plugins.datastreams.fluxes.orchidee module pycif.plugins.datastreams.fluxes.point_sources module pycif.plugins.datastreams.fluxes.tm5 module pycif.plugins.datastreams.fluxes.TNO_nc module pycif.plugins.datastreams.fluxes.VPRM1km_nc module pycif.plugins.datastreams.fluxes.VPRM_nc module pycif.plugins.datastreams.fluxes.wrfchem module pycif.plugins.datastreams.meteos.chimere_meteo module pycif.plugins.datastreams.meteos.dummy_csv module pycif.plugins.datastreams.meteos.lmdz_massflx module pycif.plugins.datastreams.meteos.tm5_meteo module pycif.plugins.datavects.standard module pycif.plugins.domains.chimere module pycif.plugins.domains.dummy module pycif.plugins.domains.flexpart module pycif.plugins.domains.gridded_NetCDF module pycif.plugins.domains.iconart module pycif.plugins.domains.lmdz module pycif.plugins.domains.wrfchem module pycif.plugins.measurements.random_perparam module

pycif.plugins.measurements.standard module pycif.plugins.minimizers.congrad module pycif.plugins.minimizers.m1qn3 module pycif.plugins.models.chimere module pycif.plugins.models.dummy module pycif.plugins.models.flexpart module pycif.plugins.models.iconart module pycif.plugins.models.lmdz module pycif.plugins.models.template module pycif.plugins.models.TM5 module pycif.plugins.models.wrfchem module pycif.plugins.modes.adjtl_test module pycif.plugins.modes.analytic module pycif.plugins.modes.ensrf module pycif.plugins.modes.footprint module pycif.plugins.modes.forward module pycif.plugins.modes.postproc module pycif.plugins.modes.variational module pycif.plugins.obsoperators.fp module pycif.plugins.obsoperators.standard module pycif.plugins.obsparsers.icos module pycif.plugins.obsparsers.obspack module pycif.plugins.obsparsers.template module pycif.plugins.obsparsers.tropomi_official module pycif.plugins.obsparsers.tropomi_sron module pycif.plugins.obsparsers.tropomi_wfmd module pycif.plugins.obsparsers.verify module pycif.plugins.obsparsers.wdcgg module pycif.plugins.obsvects.standard module pycif.plugins.platforms.ccrt_amd module pycif.plugins.platforms.docker_cif module pycif.plugins.platforms.empa_daint module pycif.plugins.platforms.fmi_puhti module pycif.plugins.platforms.lsce_obelix module pycif.plugins.platforms.tgcc_ccrt module pycif.plugins.simulators.dummy module pycif.plugins.simulators.gausscost module pycif.plugins.simulators.gausscost_flexpart module pycif.plugins.transforms.basic.background module pycif.plugins.transforms.basic.clipcrop module pycif.plugins.transforms.basic.exp module pycif.plugins.transforms.basic.families module pycif.plugins.transforms.basic.product module pycif.plugins.transforms.basic.regrid module pycif.plugins.transforms.basic.time_interpolation module pycif.plugins.transforms.basic.unit_conversion module pycif.plugins.transforms.basic.vertical_interpolation module pycif.plugins.transforms.complex.conc2ratio module pycif.plugins.transforms.complex.diagmet module pycif.plugins.transforms.complex.isotopes module pycif.plugins.transforms.complex.moist2dry module pycif.plugins.transforms.complex.ratio2conc module pycif.plugins.transforms.complex.satellites module pycif.plugins.transforms.system.dump2format module pycif.plugins.transforms.system.dump2inputs module pycif.plugins.transforms.system.fromcontrol module pycif.plugins.transforms.system.loadfromoutputs module pycif.plugins.transforms.system.run_model module pycif.plugins.transforms.system.sample2sparse module pycif.plugins.transforms.system.sparse2sample module pycif.plugins.transforms.system.toobsvect module

R

read() (pycif.utils.classes.obsvects.ObsVect method) read_chemicalscheme() (pycif.utils.classes.chemistries.Chemistry method) read_grid() (in module pycif.plugins.domains.chimere) (pycif.utils.classes.domains.Domain method) register_parser() (pycif.utils.classes.obsparsers.ObsParser class method) register_plugin() (pycif.utils.classes.baseclass.Plugin class method) (pycif.utils.classes.chemistries.Chemistry class method) (pycif.utils.classes.controlvects.ControlVect class method) (pycif.utils.classes.datastreams.DataStream class method) (pycif.utils.classes.datavects.DataVect class method) (pycif.utils.classes.domains.Domain class method) (pycif.utils.classes.measurements.Measurement class method) (pycif.utils.classes.minimizers.Minimizer class method) (pycif.utils.classes.models.Model class method) (pycif.utils.classes.modes.Mode class method) (pycif.utils.classes.obsoperators.ObsOperator class method) (pycif.utils.classes.obsvects.ObsVect class method) (pycif.utils.classes.platforms.Platform class method) (pycif.utils.classes.simulators.Simulator class method) (pycif.utils.classes.transforms.Transform class method)

rinvprod() (pycif.utils.classes.obsvects.ObsVect method) run() (pycif.utils.classes.models.Model method)

S

save_loaded() (pycif.utils.classes.baseclass.Plugin class method) set_requirements() (pycif.utils.classes.baseclass.Plugin method) Setup (class in pycif.utils.classes.setup) simul() (pycif.utils.classes.simulators.Simulator method) Simulator (class in pycif.utils.classes.simulators)

sqrtbprod() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method) sqrtbprod_ad() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method) state2inputs() (pycif.utils.classes.controlvects.ControlVect method) (pycif.utils.classes.datavects.DataVect method)

T

to_dict() (pycif.utils.classes.baseclass.Plugin class method)

to_yaml() (pycif.utils.classes.baseclass.Plugin class method) Transform (class in pycif.utils.classes.transforms)