1rootdir: &rootdir /tmp/CIF/
  2outdir: &outdir /home/chimereicos/pycif_testout/aberchet/76fc3ffebd5e4f251d56d47f5e1c438a2e3e0e1e
  3verbose: 2
  4logfile: pycif.logtest
  5workdir:  !join [*outdir, /fwd_short_setup_isotopes]
  6datei: 2000-01-01 00:00:00
  7datef: 2000-02-01 00:00:00
  8mode:
  9  plugin:
 10    name: forward
 11    version: std
 12obsoperator:
 13  autorestart: true
 14  plugin:
 15    name: standard
 16    version: std
 17platform:
 18  cores: 10
 19  plugin:
 20    name: LSCE
 21    version: obelix
 22  queue: mediump
 23model:
 24  file_controle: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes/restart/restart_1998.nc
 25  file_vcoord: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes/restart/restart_1998.nc
 26  fileexec:  !join [*rootdir, /model_sources/DISPERSION_gch/dispersion.e]
 27  plugin:
 28    name: LMDZ
 29    version: std
 30chemistry:
 31  file_yaml: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//chem_schemes/d13_scheme_ccrt.yml
 32obsvect:
 33  dump: true
 34  plugin:
 35    name: standard
 36    version: std
 37  transform_pipe:
 38    trans1:
 39      component:
 40      - concs
 41      - concs
 42      parameters_in:
 43        names:
 44        - 12CH4
 45        - 13CH4
 46      parameters_out:
 47        d13C:
 48          isotopologues:
 49          - 13CH4
 50          refs:
 51          - 12CH4
 52          standard: 0.0112372
 53        iso_mass:
 54        - 16.031
 55        - 17.035
 56        names:
 57        - d13C
 58        - CH4
 59        spec_mass: 16.0425
 60      plugin:
 61        name: conc2ratio
 62        type: transform
 63        version: std
 64      unit: volume
 65  wfunc: true
 66controlvect:
 67  plugin:
 68    name: standard
 69    version: std
 70  transform_pipe:
 71    trans1:
 72      component:
 73      - isoinicond
 74      - inicond
 75      parameters_in:
 76        names:
 77        - d13C
 78        - CH4
 79      parameters_out:
 80        d13C:
 81          standard: 0.0112372
 82        iso_mass:
 83        - 16.031
 84        - 17.035
 85        names:
 86        - 12CH4
 87        - 13CH4
 88        spec_mass: 16.0425
 89      plugin:
 90        name: ratio2conc
 91        type: transform
 92        version: std
 93      unit: mass
 94    trans2:
 95      component:
 96      - isosignatures
 97      - fluxes
 98      parameters_in:
 99        names:
100        - d13C_biof
101        - CH4_biof
102      parameters_out:
103        d13C_biof:
104          standard: 0.0112372
105        iso_mass:
106        - 16.031
107        - 17.035
108        names:
109        - 12CH4_biof
110        - 13CH4_biof
111        spec_mass: 16.0425
112      plugin:
113        name: ratio2conc
114        type: transform
115        version: std
116      unit: mass
117    trans3:
118      component:
119      - isosignatures
120      - fluxes
121      parameters_in:
122        names:
123        - d13C_bioge
124        - CH4_bioge
125      parameters_out:
126        d13C_bioge:
127          standard: 0.0112372
128        iso_mass:
129        - 16.031
130        - 17.035
131        names:
132        - 12CH4_bioge
133        - 13CH4_bioge
134        spec_mass: 16.0425
135      plugin:
136        name: ratio2conc
137        type: transform
138        version: std
139      unit: mass
140    trans4:
141      component:
142      - isosignatures
143      - fluxes
144      parameters_in:
145        names:
146        - d13C_fossil
147        - CH4_fossil
148      parameters_out:
149        d13C_fossil:
150          standard: 0.0112372
151        iso_mass:
152        - 16.031
153        - 17.035
154        names:
155        - 12CH4_fossil
156        - 13CH4_fossil
157        spec_mass: 16.0425
158      plugin:
159        name: ratio2conc
160        type: transform
161        version: std
162      unit: mass
163    trans5:
164      component:
165      - isosignatures
166      - fluxes
167      parameters_in:
168        names:
169        - d13C_others
170        - CH4_others
171      parameters_out:
172        d13C_others:
173          standard: 0.0112372
174        iso_mass:
175        - 16.031
176        - 17.035
177        names:
178        - 12CH4_others
179        - 13CH4_others
180        spec_mass: 16.0425
181      plugin:
182        name: ratio2conc
183        type: transform
184        version: std
185      unit: mass
186    trans6:
187      component:
188      - isosignatures
189      - fluxes
190      parameters_in:
191        names:
192        - d13C_wet
193        - CH4_wet
194      parameters_out:
195        d13C_wet:
196          standard: 0.0112372
197        iso_mass:
198        - 16.031
199        - 17.035
200        names:
201        - 12CH4_wet
202        - 13CH4_wet
203        spec_mass: 16.0425
204      plugin:
205        name: ratio2conc
206        type: transform
207        version: std
208      unit: mass
209    trans7:
210      component: fluxes
211      parameter_out: 12CH4
212      parameters_in:
213      - 12CH4_biof
214      - 12CH4_bioge
215      - 12CH4_fossil
216      - 12CH4_others
217      - 12CH4_wet
218      plugin:
219        name: families
220        type: transform
221        version: std
222    trans8:
223      component: fluxes
224      parameter_out: 13CH4
225      parameters_in:
226      - 13CH4_biof
227      - 13CH4_bioge
228      - 13CH4_fossil
229      - 13CH4_others
230      - 13CH4_wet
231      plugin:
232        name: families
233        type: transform
234        version: std
235datavect:
236  components:
237    concs:
238      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//monitor/
239      file: monitor_filtered_rsd_new.nc
240      file_statlev: ${PYCIF_DATATEST}/LMDZ//simple/stations_levels_LMDZ39lev.txt
241      parameters:
242        CH4: {}
243        d13C: {}
244        dD: {}
245    fluxes:
246      file_freq: 1MS
247      parameters:
248        CH4_biof:
249          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
250          err: 1
251          file: fch4.biofuels_biomass_%Y_LMDz9026vector_totCH4.nc
252          hresol: hpixels
253          plugin:
254            name: LMDZ
255            type: fluxes
256            version: sflx
257          tresol: 1MS
258          tsubresol: 10D
259          varname: flx_ch4
260          vresol: vpixels
261        CH4_bioge:
262          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
263          err: 1
264          file: fch4.biogenic_%Y_LMDz9026vector_totCH4.nc
265          hresol: hpixels
266          plugin:
267            name: LMDZ
268            type: fluxes
269            version: sflx
270          tresol: 1MS
271          tsubresol: 10D
272          varname: flx_ch4
273          vresol: vpixels
274        CH4_fossil:
275          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
276          err: 1
277          file: fch4.fossil_%Y_LMDz9026vector_totCH4.nc
278          hresol: hpixels
279          plugin:
280            name: LMDZ
281            type: fluxes
282            version: sflx
283          tresol: 1MS
284          tsubresol: 10D
285          varname: flx_ch4
286          vresol: vpixels
287        CH4_others:
288          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
289          err: 1
290          file: fch4.others_%Y_LMDz9026vector_totCH4.nc
291          hresol: hpixels
292          plugin:
293            name: LMDZ
294            type: fluxes
295            version: sflx
296          tresol: 1MS
297          tsubresol: 10D
298          varname: flx_ch4
299          vresol: vpixels
300        CH4_wet:
301          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fluxes/
302          err: 1
303          file: fch4.wetlands_%Y_LMDz9026vector_totCH4.nc
304          hresol: hpixels
305          plugin:
306            name: LMDZ
307            type: fluxes
308            version: sflx
309          tresol: 1MS
310          tsubresol: 10D
311          varname: flx_ch4
312          vresol: vpixels
313    inicond:
314      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//restart/
315      file: restart_1998.nc
316      parameters:
317        CH4:
318          bands_lat:
319          - -90.1
320          - -60
321          - -30
322          - 0
323          - 30
324          - 60
325          - 90.1
326          bands_lon:
327          - -180.1
328          - -150
329          - -120
330          - -90
331          - -60
332          - -30
333          - 0
334          - 30
335          - 60
336          - 90
337          - 120
338          - 150
339          - 180.1
340          calcstd: false
341          err: 0.1
342          hresol: bands
343          plugin:
344            name: LMDZ
345            type: fields
346            version: ic
347          restart_id: 1
348    isoinicond:
349      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//restart/
350      file: restart_1998.nc
351      parameters:
352        d13C:
353          bands_lat:
354          - -90.1
355          - -60
356          - -30
357          - 0
358          - 30
359          - 60
360          - 90.1
361          bands_lon:
362          - -180.1
363          - -150
364          - -120
365          - -90
366          - -60
367          - -30
368          - 0
369          - 30
370          - 60
371          - 90
372          - 120
373          - 150
374          - 180.1
375          calcstd: false
376          err: 0.03
377          hresol: bands
378          plugin:
379            name: LMDZ
380            type: fields
381            version: ic
382          restart_id: 3
383    isosignatures:
384      file_freq: 1MS
385      parameters:
386        d13C_biof:
387          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
388          err: 0.4
389          file: biofuels_biomass_%Y_LMDz9026vector.nc
390          hresol: regions
391          plugin:
392            name: LMDZ
393            type: fluxes
394            version: sflx
395          regions_infos:
396            dir: ${PYCIF_DATATEST}/LMDZ/
397            file: 10_regions.nc
398          tresol: 1MS
399          tsubresol: 10D
400          varname: sign_d13c
401        d13C_bioge:
402          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
403          err: 0.4
404          file: biogenic_%Y_LMDz9026vector.nc
405          hresol: regions
406          plugin:
407            name: LMDZ
408            type: fluxes
409            version: sflx
410          regions_infos:
411            dir: ${PYCIF_DATATEST}/LMDZ/
412            file: 10_regions.nc
413          tresol: 1MS
414          tsubresol: 10D
415          varname: sign_d13c
416        d13C_fossil:
417          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
418          err: 0.4
419          file: fossil_%Y_LMDz9026vector.nc
420          hresol: regions
421          plugin:
422            name: LMDZ
423            type: fluxes
424            version: sflx
425          regions_infos:
426            dir: ${PYCIF_DATATEST}/LMDZ/
427            file: 10_regions.nc
428          tresol: 1MS
429          tsubresol: 10D
430          varname: sign_d13c
431        d13C_others:
432          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
433          err: 0.4
434          file: others_%Y_LMDz9026vector.nc
435          hresol: regions
436          plugin:
437            name: LMDZ
438            type: fluxes
439            version: sflx
440          regions_infos:
441            dir: ${PYCIF_DATATEST}/LMDZ/
442            file: 10_regions.nc
443          tresol: 1MS
444          tsubresol: 10D
445          varname: sign_d13c
446        d13C_wet:
447          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//signatures/
448          err: 0.4
449          file: wetlands_%Y_LMDz9026vector.nc
450          hresol: regions
451          plugin:
452            name: LMDZ
453            type: fluxes
454            version: sflx
455          regions_infos:
456            dir: ${PYCIF_DATATEST}/LMDZ/
457            file: 10_regions.nc
458          tresol: 1MS
459          tsubresol: 10D
460          varname: sign_d13c
461    kinetic:
462      dir: ${PYCIF_DATATEST}/LMDZ//simple/kinetic/
463      file: TransCom.vmr.new.m%m.nc
464      file_freq: 1MS
465      plugin:
466        name: LMDZ
467        type: fields
468        version: photochem
469    meteo:
470      dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//meteo/
471      file_freq: 1MS
472      plugin:
473        name: LMDZ
474        version: mass-fluxes
475    prescrconcs:
476      file_freq: 1MS
477      parameters:
478        Cl:
479          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
480          file: CM5A2CHT_DM_%Y_m%m.nc
481        O1D:
482          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
483          file: CM5A2CHT_DM_%Y_m%m.nc
484        OH:
485          dir: ${PYCIF_DATATEST}/LMDZ//clumped_isotopes//fields/
486          file: CM5A2CHT_DM_%Y_m%m.nc
487      plugin:
488        name: LMDZ
489        type: fields
490        version: prescrconcs
491  plugin:
492    name: standard
493    version: std
494domain:
495  dir_vcoord: ${PYCIF_DATATEST}/LMDZ/simple/restart/
496  file_vcoord: restart_2012-01_ch4_d13c.nc
497  filegrid: ${PYCIF_DATATEST}/LMDZ//grid_LMDZ96_96.txt
498  nlat: 96
499  nlev: 39
500  nlon: 97
501  plugin:
502    name: LMDZ
503    version: std
504  type: deg
505  xmax: 180
506  xmin: -180
507  ymax: 90
508  ymin: -90